[Users-list] flexibility

[Antonio Carrieri]

I would like to know how flexibility is achieved within GLUE?
Is the docking performed my means of MonteCarlo algorithm or something
similar?

Moreover I have a set of low energy conformations of a ligand I would
like to dock against different conformations of the same target. 
Since the use of the GUI is quite tedious in this case, is it possible
to do it from the command line ?

Ciao
Antonio